PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG121500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 134aa    MW: 14568.5 Da    PI: 5.2147
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB811.6e-251811797
                NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                         m++  P n+ki+ dake v++cv+ef   +   a + c++++r t++gddl+ al++lGf+d v  l +yl++yre+eg +
  Pavir.4KG121500.1.p  1 MRHGSPPNSKIAGDAKEAVDNCVAEFSPVLIRAAVEECRQDRRTTVTGDDLILALSNLGFDDSVRVLALYLRRYREIEGTR 81
                         78888*************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.5E-9155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-20286IPR009072Histone-fold
SuperFamilySSF471131.22E-16383IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MRHGSPPNSK IAGDAKEAVD NCVAEFSPVL IRAAVEECRQ DRRTTVTGDD LILALSNLGF  60
DDSVRVLALY LRRYREIEGT RPRARHTLMV ALEHPTAPAV EAEVQSPAPP SPGLDLQLGP  120
PQVRDVTELG PHAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-201761893NF-YB
4awl_B1e-201761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-201761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-201761792Transcription factor HapC (Eurofung)
4g92_B1e-201761792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700681.12e-52PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBLK3Y1038e-52K3Y103_SETIT; Uncharacterized protein
STRINGSi007865m2e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-17nuclear factor Y, subunit B8